linkcomm - Tools for Generating, Visualizing, and Analysing Link Communities in Networks

Link communities reveal the nested and overlapping structure in networks, and uncover the key nodes that form connections to multiple communities. linkcomm provides a set of tools for generating, visualizing, and analysing link communities in networks of arbitrary size and type. The linkcomm package also includes tools for generating, visualizing, and analysing Overlapping Cluster Generator (OCG) communities. Kalinka and Tomancak (2011) <doi:10.1093/bioinformatics/btr311>.

Last updated 4 years ago

clusteringnetworksnetworks-biologyvisualizationcpp

7.52 score 7 stars 4 dependents 113 scripts 693 downloads

muscle - Multiple Sequence Alignment with MUSCLE

MUSCLE performs multiple sequence alignments of nucleotide or amino acid sequences.

Last updated 4 months ago

multiplesequencealignmentalignmentsequencinggeneticssequencematchingdataimportcpp

5.21 score 81 scripts 564 downloads

hint - Tools for Hypothesis Testing Based on Hypergeometric Intersection Distributions

Hypergeometric Intersection distributions are a broad group of distributions that describe the probability of picking intersections when drawing independently from two (or more) urns containing variable numbers of balls belonging to the same n categories. <arXiv:1305.0717>.

Last updated 3 years ago

combinatoricsdiscrete-mathematicsfrequentist-statisticshypergeometric-distributionhypothesis-testingprobabilitycpp

2.93 score 17 scripts 179 downloads